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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6753422 chr2:113293818 T/A RGPD5 chr2:110550335-110615272:+ -0.5 -6.89 1.73E-11 Box Plot
THCA rs6753993 chr2:101173190 A/G LOC285359 chr3:101431278-101432259:+ -0.56 -13.35 9.05E-35 Box Plot
THCA rs6755547 chr2:101136469 C/A LOC285359 chr3:101431278-101432259:+ 0.3 5.98 4.3E-9 Box Plot
THCA rs6755800 chr2:101184292 G/T LOC285359 chr3:101431278-101432259:+ 0.4 9.04 3.95E-18 Box Plot
THCA rs6755846 chr2:101086799 T/C LOC285359 chr3:101431278-101432259:+ 0.3 5.94 5.52E-9 Box Plot
THCA rs6756181 chr2:132195328 G/T CCDC74B chr2:130896860-130902707:- 0.36 6.85 2.29E-11 Box Plot
THCA rs6757757 chr2:113236428 T/A RGPD5 chr2:110550335-110615272:+ -0.48 -7.34 9.1E-13 Box Plot
THCA rs6759275 chr2:113231682 T/C RGPD5 chr2:110550335-110615272:+ -0.48 -7.07 5.58E-12 Box Plot
THCA rs6759283 chr2:112967145 A/G RGPD5 chr2:110550335-110615272:+ -0.51 -7.14 3.49E-12 Box Plot
THCA rs6760096 chr2:151920238 C/T COG8 chr16:69360816-69373570:- -0.37 -6.42 3.3E-10 Box Plot
THCA rs6760452 chr2:101067183 C/A LOC285359 chr3:101431278-101432259:+ 0.36 6.8 3.14E-11 Box Plot
THCA rs6761440 chr2:112959193 G/A RGPD5 chr2:110550335-110615272:+ -0.51 -7.11 4.22E-12 Box Plot
THCA rs6762766 chr3:125817731 C/G ROPN1 chr3:123687368-123711025:- -0.35 -6.34 5.31E-10 Box Plot
THCA rs6764694 chr3:125709351 T/C ROPN1 chr3:123687368-123711025:- -0.34 -5.97 4.51E-9 Box Plot
THCA rs67652222 chr6:27586220 C/T BTN3A2 chr6:26365387-26378548:+ -0.89 -12.65 7.92E-32 Box Plot